PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.NZZ6W
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 456aa    MW: 49760.4 Da    PI: 7.6516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.NZZ6WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-07221243123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  Aradu.NZZ6W 221 HYCSVCGKGFKRDANLRMHMRAH 243
                  68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.89E-6219246No hitNo description
PROSITE profilePS5015712.736221248IPR007087Zinc finger, C2H2
SMARTSM003550.0022221243IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-7221277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SMARTSM00355160273306IPR015880Zinc finger, C2H2-like
SMARTSM0035523311333IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MISTSIEQNQ GLMMQMFPTP PPGSEDLVSQ QSMEIVNNSS VGSSSSSTAA AAASSSSHSS  60
SLLFNLSVLK DKLNQVQTLV GVILSPDQNL QDSTTSMAVS SMNSTIQEII PPPPPPPPPG  120
TIATTVAFAN NHHELHQQQH QRLLINNNNN NLRGFFSSTT DSEALDNWLG ESYNNTGGVD  180
CKVNNNDDDD PSVEISDSKE GAKKLDIIEL DAADLLAKYT HYCSVCGKGF KRDANLRMHM  240
RAHGDEYKTS AALSNPLKQN NNGENGDCLP KKYSCPQEGC RWNQKHAKFQ PLKSMICAKN  300
HYKRSHCPKM YVCKRCNQKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF  360
VGHRALSIAF HQYNRLIAPI VSTLTHGLML KEVALLIVVE SFITNAGFWI HWIWRPKCGK  420
FGSCCSASGL VAAAAGLVGL CDAHGGLNGV AADDLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935812.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLV7BYJ41e-136V7BYJ4_PHAVU; Uncharacterized protein
STRINGGLYMA12G30285.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.15e-88C2H2 family protein